MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Shigella flexneri
19428wH2_1568
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
Genome Viewer
PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 237
bases: 5,139,722 bps
CDS: 4,826
rRNA: 10
Repeat region:
tmRNA: 1
tRNA: 89
misc RNA:
Total features: 4,926
Total number of protein coding genes annotated/found:
4,826
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Items 1 - 20
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Molecule ^
PID/GenBank ID *
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5015|JADGKR010000103.1
SEQF5015_00001
Genome Viewer
NA
AA
741/247
1-741
Ferredoxin--NADP reductase
SEQF5015|JADGKR010000107.1
SEQF5015_00002
Genome Viewer
NA
AA
204/68
367-570
hypothetical protein
SEQF5015|JADGKR010000108.1
SEQF5015_00003
Genome Viewer
NA
AA
384/128
495-112
tRNA modification GTPase MnmE
SEQF5015|JADGKR010000010.1
SEQF5015_00004
Genome Viewer
NA
AA
807/269
205-1011
tRNA threonylcarbamoyladenosine dehydratase
SEQF5015|JADGKR010000010.1
SEQF5015_00005
Genome Viewer
NA
AA
444/148
1505-1062
Sulfur acceptor protein CsdE
SEQF5015|JADGKR010000010.1
SEQF5015_00006
Genome Viewer
NA
AA
1206/402
2710-1505
Cysteine desulfurase CsdA
SEQF5015|JADGKR010000010.1
SEQF5015_00007
Genome Viewer
NA
AA
228/76
2902-3129
putative lipoprotein YgdR
SEQF5015|JADGKR010000010.1
SEQF5015_00008
Genome Viewer
NA
AA
918/306
3480-4397
Glycine cleavage system transcriptional activator
SEQF5015|JADGKR010000010.1
SEQF5015_00009
Genome Viewer
NA
AA
396/132
4416-4811
hypothetical protein
SEQF5015|JADGKR010000010.1
SEQF5015_00010
Genome Viewer
NA
AA
1101/367
4804-5904
Ribosomal RNA large subunit methyltransferase M
SEQF5015|JADGKR010000010.1
SEQF5015_00011
Genome Viewer
NA
AA
732/244
6679-5948
putative HTH-type transcriptional regulator YdjF
SEQF5015|JADGKR010000010.1
SEQF5015_00012
Genome Viewer
NA
AA
423/141
7159-6737
L-fucose mutarotase
SEQF5015|JADGKR010000010.1
SEQF5015_00013
Genome Viewer
NA
AA
1419/473
8579-7161
L-fuculokinase
SEQF5015|JADGKR010000010.1
SEQF5015_00014
Genome Viewer
NA
AA
1776/592
10463-8688
L-fucose isomerase
SEQF5015|JADGKR010000010.1
SEQF5015_00015
Genome Viewer
NA
AA
1317/439
11812-10496
L-fucose-proton symporter
SEQF5015|JADGKR010000010.1
SEQF5015_00016
Genome Viewer
NA
AA
648/216
12359-13006
L-fuculose phosphate aldolase
SEQF5015|JADGKR010000010.1
SEQF5015_00017
Genome Viewer
NA
AA
1149/383
13034-14182
Lactaldehyde reductase
SEQF5015|JADGKR010000010.1
SEQF5015_00018
Genome Viewer
NA
AA
846/282
15082-14237
Flap endonuclease Xni
SEQF5015|JADGKR010000010.1
SEQF5015_00019
Genome Viewer
NA
AA
1368/456
16471-15104
L-serine dehydratase 2
SEQF5015|JADGKR010000010.1
SEQF5015_00020
Genome Viewer
NA
AA
1290/430
17818-16529
Serine transporter
Items 1 - 20
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* Click GI, UID, Gene Product to go to NCBI record
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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